STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0301Capsular polysaccharide biosynthesis protein. (512 aa)    
Predicted Functional Partners:
Cla_0305
Capsular polysaccharide biosynthesis protein, putative nucleotidyltransferase.
 
  
 0.964
Cla_0308
Capsular polysaccharide biosynthesis protein, putative nucleotidyltransferase.
 
  
 0.963
Cla_0300
Capsular polysaccharide biosynthesis protein; Possible pseudogene.
 
  
 0.955
Cla_0302
Capsular polysaccharide biosynthesis protein.
 
     0.949
Cla_0303
Conserved hypothetical protein.
 
     0.879
Cla_0304
Pfam match to PF00702.17 Hydrolase.
 
     0.846
Cla_0306
Conserved hypothetical protein.
  
    0.797
Cla_0307
Conserved hypothetical protein.
       0.795
selB
Selenocysteine-specific elongation factor; Pfam matches to PF00009.18 GTP_EFTU, and to PF03144.16 GTP_EFTU_D2.
   
 0.685
Cla_0297
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase, putative; Pfam matches to PF07719.8 TPR_2, and to PF00515.19 TPR_1.
  
 
 0.666
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.