STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0304Pfam match to PF00702.17 Hydrolase. (211 aa)    
Predicted Functional Partners:
Cla_0303
Conserved hypothetical protein.
 
  
 0.954
Cla_0305
Capsular polysaccharide biosynthesis protein, putative nucleotidyltransferase.
 
    0.952
Cla_0308
Capsular polysaccharide biosynthesis protein, putative nucleotidyltransferase.
 
    0.952
Cla_0302
Capsular polysaccharide biosynthesis protein.
 
    0.941
Cla_0300
Capsular polysaccharide biosynthesis protein; Possible pseudogene.
 
  
 0.852
Cla_0301
Capsular polysaccharide biosynthesis protein.
 
     0.846
Cla_0306
Conserved hypothetical protein.
  
    0.787
Cla_0307
Conserved hypothetical protein.
       0.786
gyrB
DNA gyrase, subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
  
   
 0.702
Cla_1383
Conserved hypothetical protein, possible beta-lactamase; Pfam match to PF00905.13 Transpeptidase.
      
 0.658
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.