STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0308Capsular polysaccharide biosynthesis protein, putative nucleotidyltransferase. (245 aa)    
Predicted Functional Partners:
Cla_0301
Capsular polysaccharide biosynthesis protein.
 
  
 0.976
Cla_0304
Pfam match to PF00702.17 Hydrolase.
 
    0.956
Cla_0303
Conserved hypothetical protein.
 
     0.953
Cla_0300
Capsular polysaccharide biosynthesis protein; Possible pseudogene.
 
     0.944
Cla_0305
Capsular polysaccharide biosynthesis protein, putative nucleotidyltransferase.
 
    
0.854
Cla_0297
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase, putative; Pfam matches to PF07719.8 TPR_2, and to PF00515.19 TPR_1.
  
  
 0.851
Cla_0302
Capsular polysaccharide biosynthesis protein.
 
   
0.843
Cla_0306
Conserved hypothetical protein.
      0.815
Cla_0307
Conserved hypothetical protein.
  
    0.806
ptmE
Flagellin modification protein PtmE, putative sugar-phosphate nucleotide transferase; Pfam matches to PF00571.19 CBS, and to PF00483.14 NTP_transferase.
  
  
 0.665
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.