STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0312Conserved hypothetical protein; Contains poly-GC tract leading to end point slips; Pfam match to PF08241.3 Methyltransf_11. (142 aa)    
Predicted Functional Partners:
Cla_0314
Conserved hypothetical protein.
 
     0.763
Cla_0313
Putative methyltransferase; Pfam match to PF08241.3 Methyltransf_11.
 
 
  
0.636
Cla_0316
Putative sugar nucleotidyltransferase.
 
    0.602
cysC
Pfam match to PF01583.11 APS_kinase.
 
  
 0.584
Cla_0315
Conserved hypothetical protein, putative glutamine amidotransferase; Pfam match to PF00117.19 GATase.
       0.514
flaG
Flagellar protein FlaG; Pfam match to PF03646.6 FlaG.
   
   0.514
bioB
Biotin synthetase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.501
kpsC
Capsular polysaccharide export protein KpsC; Pfam matches to PF05159.5 Capsule_synth, and to PF05159.5 Capsule_synth.
       0.490
kpsS
Capsular polysaccharide export protein KpsS; Pfam match to PF05159.5 Capsule_synth.
       0.485
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.