STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0313Putative methyltransferase; Pfam match to PF08241.3 Methyltransf_11. (257 aa)    
Predicted Functional Partners:
Cla_0314
Conserved hypothetical protein.
 
    0.937
Cla_0312
Conserved hypothetical protein; Contains poly-GC tract leading to end point slips; Pfam match to PF08241.3 Methyltransf_11.
 
  
0.866
Cla_0315
Conserved hypothetical protein, putative glutamine amidotransferase; Pfam match to PF00117.19 GATase.
 
    0.854
Cla_0316
Putative sugar nucleotidyltransferase.
 
    0.851
cysC
Pfam match to PF01583.11 APS_kinase.
 
  
 0.820
kpsC
Capsular polysaccharide export protein KpsC; Pfam matches to PF05159.5 Capsule_synth, and to PF05159.5 Capsule_synth.
       0.764
kpsS
Capsular polysaccharide export protein KpsS; Pfam match to PF05159.5 Capsule_synth.
       0.757
pheA
Chorismate mutase/prephenate dehydratase; Pfam matches to PF01817.12 CM_2, and to PF00800.9 PDT.
 
  
 0.481
bioB
Biotin synthetase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.417
Cla_0322
Cytochrome P450 family protein; Pfam match to PF00067.13 p450; Belongs to the cytochrome P450 family.
    
 
 0.415
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.