STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kpsSCapsular polysaccharide export protein KpsS; Pfam match to PF05159.5 Capsule_synth. (392 aa)    
Predicted Functional Partners:
kpsC
Capsular polysaccharide export protein KpsC; Pfam matches to PF05159.5 Capsule_synth, and to PF05159.5 Capsule_synth.
   
 0.992
kpsT
Capsular polysaccharide ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
   
 0.940
kpsD
Capsular polysaccharide ABC transporter, periplasmic polysaccharide-binding protein; Pfam match to PF02563.7 Poly_export.
 
   
 0.934
kpsE
Capsular polysaccharide export inner-membrane protein KpsE.
 
 
 
 0.904
kpsM
Capsular polysaccharide ABC transporter, permease protein; Pfam match to PF01061.15 ABC2_membrane.
 
   
 0.834
Cla_0314
Conserved hypothetical protein.
       0.821
Cla_0315
Conserved hypothetical protein, putative glutamine amidotransferase; Pfam match to PF00117.19 GATase.
       0.821
cysC
Pfam match to PF01583.11 APS_kinase.
       0.821
Cla_0313
Putative methyltransferase; Pfam match to PF08241.3 Methyltransf_11.
       0.799
Cla_0316
Putative sugar nucleotidyltransferase.
       0.792
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.