STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0321Conserved hypothetical integral membrane protein. (376 aa)    
Predicted Functional Partners:
Cla_0322
Cytochrome P450 family protein; Pfam match to PF00067.13 p450; Belongs to the cytochrome P450 family.
 
 0.957
Cla_0323
Conserved hypothetical integral membrane protein.
       0.821
kpsC
Capsular polysaccharide export protein KpsC; Pfam matches to PF05159.5 Capsule_synth, and to PF05159.5 Capsule_synth.
  
     0.693
Cla_0114
Conserved hypothetical protein.
  
  
 0.687
kpsS
Capsular polysaccharide export protein KpsS; Pfam match to PF05159.5 Capsule_synth.
 
     0.679
Cla_0972
Conserved hypothetical protein, ankyrin repeat domain protein; Pfam match to PF00023.21 Ank.
  
 0.595
Cla_0320
Putative glycosyltransferase.
   
   0.551
dsbI
Disulfide bond formation protein, DsbB family; Pfam match to PF02600.7 DsbB.
  
     0.527
kpsE
Capsular polysaccharide export inner-membrane protein KpsE.
  
     0.522
flgG2
Flagellar distal rod protein FlgG; Pfam match to PF00460.11 Flg_bb_rod.
   
   0.517
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.