STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0329Conserved hypothetical protein. (184 aa)    
Predicted Functional Partners:
ctsE
Putative type II protein secretion system E protein CtsE; Pfam match to PF00437.11 GSPII_E.
  
 
 0.852
Cla_0325
Conserved hypothetical protein.
       0.804
miaB
tRNA-i(6)A37 thiotransferase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.804
Cla_0327
Conserved hypothetical protein (DUF374 domain protein); Pfam match to PF04028.4 DUF374.
       0.804
Cla_0328
Conserved hypothetical protein.
       0.804
Cla_0330
Conserved hypothetical protein.
       0.804
ctsF
Putative type II protein secretion system F protein CtsF; Possible pseudogene; Pfam match to PF00482.14 GSPII_F.
   
 
 0.664
nusA
Transcription elongation factor NusA; Participates in both transcription termination and antitermination.
       0.634
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.