STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lgtProlipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. (271 aa)    
Predicted Functional Partners:
trpB
Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
    0.869
oxaA
60 kDa inner-membrane protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
  
 0.720
frdC
Fumarate reductase, cytochrome b subunit; Pfam match to PF02967.5 Fum_red_TM.
       0.660
Cla_0336
Conserved hypothetical protein, predicted ATP/GTP-binding protein; Pfam match to PF00350.14 Dynamin_N.
       0.660
Cla_0337
Conserved hypothetical protein, predicted ATP/GTP-binding protein.
       0.660
Cla_0331
Conserved hypothetical lipoprotein.
       0.657
frdA
Fumarate reductase, flavoprotein subunit; Pfam matches to PF00890.15 FAD_binding_2, and to PF02910.11 Succ_DH_flav_C.
       0.657
frdB
Fumarate reductase, iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
       0.657
gpsA
Glycerol 3-phosphate dehydrogenase; Pfam matches to PF01210.14 NAD_Gly3P_dh_N, and to PF07479.5 NAD_Gly3P_dh_C; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
    0.628
ubiA
4-hydroxybenzoate octaprenyltranferase; Pfam match to PF01040.9 UbiA; Belongs to the UbiA prenyltransferase family.
  
    0.588
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.