STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0337Conserved hypothetical protein, predicted ATP/GTP-binding protein. (605 aa)    
Predicted Functional Partners:
rpsP
Pfam match to PF00886.10 Ribosomal_S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 0.888
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
  0.883
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
    
 0.875
Cla_0336
Conserved hypothetical protein, predicted ATP/GTP-binding protein; Pfam match to PF00350.14 Dynamin_N.
 
    
0.863
rpsI
Pfam match to PF00380.10 Ribosomal_S9; Belongs to the universal ribosomal protein uS9 family.
   
 0.852
frdC
Fumarate reductase, cytochrome b subunit; Pfam match to PF02967.5 Fum_red_TM.
 
     0.828
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 0.824
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 0.817
frdA
Fumarate reductase, flavoprotein subunit; Pfam matches to PF00890.15 FAD_binding_2, and to PF02910.11 Succ_DH_flav_C.
  
  
 0.811
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
   
 0.806
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.