STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Cla_0339Conserved hypothetical protein, pyridoxamine 5'-phosphate oxidase family; Pfam match to PF01243.11 Pyridox_oxidase. (168 aa)    
Predicted Functional Partners:
Cla_0340
Putative modulator of drug activity MdaB; Pfam match to PF02525.8 Flavodoxin_2.
       0.773
pnuC
Nicotinamide mononucleotide transporter; Pfam match to PF04973.3 NMN_transporter.
       0.678
Cla_1526
ABC transporter, periplasmic binding protein; Pfam match to PF01547.16 SBP_bac_1.
   
    0.666
Cla_0408
Conserved hypothetical protein.
   
    0.573
p19
19 kDa periplasmic protein.
   
    0.569
Cla_1170
Iron permease, FTR1 family; Pfam match to PF03239.5 FTR1.
   
    0.559
Cla_0342
Putative Blc-like protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
  
    0.556
Cla_0341
Transcriptional regulator, MarR family; Pfam match to PF01638.8 DUF24.
       0.545
por
Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam matches to PF01855.10 POR_N, and to PF01558.9 POR.
    
   0.505
pdxJ
Pyridoxal phosphate biosynthetic protein J; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
  0.499
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.