STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0340Putative modulator of drug activity MdaB; Pfam match to PF02525.8 Flavodoxin_2. (193 aa)    
Predicted Functional Partners:
Cla_0339
Conserved hypothetical protein, pyridoxamine 5'-phosphate oxidase family; Pfam match to PF01243.11 Pyridox_oxidase.
       0.773
pnuC
Nicotinamide mononucleotide transporter; Pfam match to PF04973.3 NMN_transporter.
 
     0.759
aspB
Aspartate aminotransferase; Pfam match to PF00155.12 Aminotran_1_2.
   
    0.694
Cla_0341
Transcriptional regulator, MarR family; Pfam match to PF01638.8 DUF24.
     
 0.627
Cla_0342
Putative Blc-like protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
 
     0.623
aspC
Aminotransferase (AspC family); Pfam match to PF00155.12 Aminotran_1_2.
   
    0.576
kefB
Sodium/hydrogen exchanger family protein; Pfam matches to PF00999.12 Na_H_Exchanger, and to PF02254.9 TrkA_N; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.571
Cla_0159
Na+/H+ antiporter; Pfam match to PF00999.12 Na_H_Exchanger.
  
 
 0.405
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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