STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0343NADP-dependent alcohol dehydrogenase; Pfam matches to PF08240.3 ADH_N, and to PF00107.17 ADH_zinc_N. (360 aa)    
Predicted Functional Partners:
pta
Phosphate acetyltransferase; Pfam match to PF01515.10 PTA_PTB.
   
  
 0.641
hsdS
Type I restriction-modification system, S subunit; Pfam matches to PF01420.10 Methylase_S, and to PF01420.10 Methylase_S.
       0.534
hsdR
Type I restriction-modification system, R subunit; Pfam matches to PF04313.5 HSDR_N, and to PF04851.6 ResIII.
       0.521
rloE
Conserved hypothetical protein.
       0.511
rloG
Conserved hypothetical protein.
       0.511
putA
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 
 0.504
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; Pfam match to PF02433.6 FixO.
   
    0.400
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.