STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hsdRType I restriction-modification system, R subunit; Pfam matches to PF04313.5 HSDR_N, and to PF04851.6 ResIII. (770 aa)    
Predicted Functional Partners:
hsdS
Type I restriction-modification system, S subunit; Pfam matches to PF01420.10 Methylase_S, and to PF01420.10 Methylase_S.
 
 
 0.976
rloE
Conserved hypothetical protein.
       0.757
rloG
Conserved hypothetical protein.
       0.757
mloC
Conserved hypothetical protein.
       0.559
Cla_0343
NADP-dependent alcohol dehydrogenase; Pfam matches to PF08240.3 ADH_N, and to PF00107.17 ADH_zinc_N.
       0.521
dsbI
Disulfide bond formation protein, DsbB family; Pfam match to PF02600.7 DsbB.
      
 0.443
ffh
Signal recognition particle protein; Pfam matches to PF02881.10 SRP54_N, and to PF00448.13 SRP54.
      
 0.427
Cla_0556
Conserved hypothetical protein.
   
    0.409
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.