STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hsdSType I restriction-modification system, S subunit; Pfam matches to PF01420.10 Methylase_S, and to PF01420.10 Methylase_S. (390 aa)    
Predicted Functional Partners:
hsdR
Type I restriction-modification system, R subunit; Pfam matches to PF04313.5 HSDR_N, and to PF04851.6 ResIII.
 
 
 0.976
mloC
Conserved hypothetical protein.
 
    0.875
rloE
Conserved hypothetical protein.
       0.773
rloG
Conserved hypothetical protein.
       0.773
Cla_0005
Conserved hypothetical protein (DUF511 domain protein); Pfam match to PF04373.4 DUF511.
 
    0.765
mcrB
Conserved hypothetical protein, putative ATPase, AAA family; Pfam match to PF07728.5 AAA_5.
 
  
 0.623
tlyA
Ribosomal RNA large subunit methyltransferase, FtsJ family; Pfam match to PF01728.10 FtsJ.
      
 0.581
Cla_0343
NADP-dependent alcohol dehydrogenase; Pfam matches to PF08240.3 ADH_N, and to PF00107.17 ADH_zinc_N.
       0.534
mutS
Mismatch repair ATPase MutS, MutS2 family; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
    
 
 0.451
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.447
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.