STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhTPutative integral membrane protein (DUF395 domain protein); Pfam matches to PF04143.5 DUF395, and to PF04143.5 DUF395. (404 aa)    
Predicted Functional Partners:
fdhU
Conserved hypothetical protein, SirA family; Pfam match to PF01206.8 SirA; Belongs to the sulfur carrier protein TusA family.
 
  
 0.995
pimT
protein-L-isoaspartate O-methyltransferase; Pfam match to PF01135.10 PCMT.
      
 0.641
feoB
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
      
 0.625
p19
19 kDa periplasmic protein.
      
 0.619
selB
Selenocysteine-specific elongation factor; Pfam matches to PF00009.18 GTP_EFTU, and to PF03144.16 GTP_EFTU_D2.
 
   
 0.504
selA
L-seryl-tRNA(SeC) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.484
cfrA
Iron-regulated outer membrane virulence protein, TonB receptor CfrA; Pfam matches to PF07715.6 Plug, and to PF00593.15 TonB_dep_Rec.
  
   
 0.457
yedF
Putative transcriptional regulator; Pfam match to PF01206.8 SirA; Belongs to the sulfur carrier protein TusA family.
  
  
 0.440
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
       0.434
Cla_0369
Conserved hypothetical protein.
       0.429
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.