STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0379Conserved hypothetical protein. (181 aa)    
Predicted Functional Partners:
addB
Conserved hypothetical protein.
     
 0.840
Cla_0380
Conserved hypothetical protein.
       0.804
addA
ATP-dependent DNA helicase, UvrD/REP family; Pfam match to PF00580.12 UvrD-helicase; Belongs to the helicase family. UvrD subfamily.
       0.804
ccoQ
Cytochrome c oxidase, cbb3-type, subunit IV; Pfam match to PF09672.1 Cbb3_Q_epsi.
       0.565
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
       0.565
Cla_0378
Conserved hypothetical protein.
       0.565
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; Pfam match to PF02433.6 FixO.
       0.562
ccoN
Cytochrome c oxidase, cbb3-type, subunit I; Pfam match to PF00115.11 COX1; Belongs to the heme-copper respiratory oxidase family.
       0.553
Cla_0373
Conserved hypothetical integral membrane protein.
       0.433
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.