Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
addBConserved hypothetical protein. (794 aa)    
Predicted Functional Partners:
addA
ATP-dependent DNA helicase, UvrD/REP family; Pfam match to PF00580.12 UvrD-helicase; Belongs to the helicase family. UvrD subfamily.
 
   
 0.966
Cla_0379
Conserved hypothetical protein.
     
 0.853
Cla_0380
Conserved hypothetical protein.
     
 0.838
Cla_0371
Conserved hypothetical protein (DUF507 domain protein); Pfam match to PF04368.4 DUF507.
 
     0.761
Cla_0960
Conserved hypothetical lipoprotein.
 
     0.723
Cla_0486
Conserved hypothetical integral membrane protein, CvpA family; Pfam match to PF02674.7 Colicin_V.
  
     0.705
ybgF
Conserved hypothetical protein.
  
     0.704
Cla_1510
Conserved hypothetical protein (RDD domain protein); Pfam match to PF06271.3 RDD.
  
     0.692
holA
Conserved hypothetical protein; Pfam match to PF06144.4 DNA_pol3_delta.
  
     0.690
Cla_1216
Conserved hypothetical protein, putative ComEC/Rec2-related protein domain protein; Pfam match to PF03772.7 Competence.
  
     0.683
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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