STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
addAATP-dependent DNA helicase, UvrD/REP family; Pfam match to PF00580.12 UvrD-helicase; Belongs to the helicase family. UvrD subfamily. (915 aa)    
Predicted Functional Partners:
addB
Conserved hypothetical protein.
 
   
 0.954
Cla_0522
Conserved hypothetical protein, possible helicase.
  
 
 0.944
Cla_0379
Conserved hypothetical protein.
       0.804
Cla_0380
Conserved hypothetical protein.
       0.804
Cla_1460
Conserved hypothetical protein.
 
 
 0.720
Cla_1216
Conserved hypothetical protein, putative ComEC/Rec2-related protein domain protein; Pfam match to PF03772.7 Competence.
 
     0.647
holA
Conserved hypothetical protein; Pfam match to PF06144.4 DNA_pol3_delta.
 
     0.645
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.619
tsaB
Conserved hypothetical protein.
  
    0.581
Cla_1510
Conserved hypothetical protein (RDD domain protein); Pfam match to PF06271.3 RDD.
  
     0.578
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.