STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ctsDPutative type II protein secretion system D protein CtsD; Pfam match to PF00263.12 Secretin; Belongs to the bacterial secretin family. (463 aa)    
Predicted Functional Partners:
ctsE
Putative type II protein secretion system E protein CtsE; Pfam match to PF00437.11 GSPII_E.
 
  
 0.982
ctsX
Putative Campylobacter transformation system protein CtsX.
  
  
 0.941
ctsF
Putative type II protein secretion system F protein CtsF; Possible pseudogene; Pfam match to PF00482.14 GSPII_F.
 
  
 0.893
por
Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam matches to PF01855.10 POR_N, and to PF01558.9 POR.
       0.852
Cla_0389
Hypothetical protein.
       0.825
ctsG
Putative Campylobacter transformation system protein CtsG; Pfam match to PF07963.3 N_methyl.
 
  
 0.790
proC
Pyrroline-5-carboxylate reductase; Pfam match to PF03807.8 F420_oxidored.
  
   
 0.700
dprA
DNA processing protein A; Pfam match to PF02481.6 SMF.
      
 0.692
Cla_0917
Outer membrane efflux protein; Pfam match to PF02321.9 OEP.
  
  
 0.679
Cla_0420
TPR-domain containing protein; Pfam matches to PF00515.19 TPR_1, and to PF00515.19 TPR_1.
  
  
 0.668
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.