STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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ctsXPutative Campylobacter transformation system protein CtsX. (109 aa)    
Predicted Functional Partners:
ctsD
Putative type II protein secretion system D protein CtsD; Pfam match to PF00263.12 Secretin; Belongs to the bacterial secretin family.
  
  
 0.941
ctsE
Putative type II protein secretion system E protein CtsE; Pfam match to PF00437.11 GSPII_E.
  
  
 0.940
por
Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam matches to PF01855.10 POR_N, and to PF01558.9 POR.
       0.851
Cla_0389
Hypothetical protein.
       0.825
rpoB
DNA-directed RNA polymerase, beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.805
rpoC
DNA-directed RNA polymerase, beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.805
proC
Pyrroline-5-carboxylate reductase; Pfam match to PF03807.8 F420_oxidored.
    
 
 0.673
dprA
DNA processing protein A; Pfam match to PF02481.6 SMF.
      
 0.658
ctsW
Conserved hypothetical protein, possible purine/pyrimidine phosphoribosyltransferase.
      
 0.658
ctsG
Putative Campylobacter transformation system protein CtsG; Pfam match to PF07963.3 N_methyl.
      
 0.658
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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