STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctsFPutative type II protein secretion system F protein CtsF; Possible pseudogene; Pfam match to PF00482.14 GSPII_F. (321 aa)    
Predicted Functional Partners:
ctsE
Putative type II protein secretion system E protein CtsE; Pfam match to PF00437.11 GSPII_E.
 
 
 0.993
Cla_0977
Peptidase, A24 family; Pfam match to PF06750.4 DiS_P_DiS.
 
  
 0.912
ctsD
Putative type II protein secretion system D protein CtsD; Pfam match to PF00263.12 Secretin; Belongs to the bacterial secretin family.
 
  
 0.893
Cla_1522
Conserved hypothetical protein.
  
  
 0.867
ctsG
Putative Campylobacter transformation system protein CtsG; Pfam match to PF07963.3 N_methyl.
 
  
 0.799
Cla_1183
N-terminal methylation domain protein; Pfam match to PF07963.3 N_methyl.
  
  
 0.757
Cla_0433
Conserved hypothetical protein; Pfam match to PF07963.3 N_methyl.
  
  
 0.727
Cla_0329
Conserved hypothetical protein.
   
 
 0.664
por
Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam matches to PF01855.10 POR_N, and to PF01558.9 POR.
       0.635
ssb
Single-strand DNA binding protein; Pfam match to PF00436.16 SSB.
  
    0.610
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.