STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0407Conserved hypothetical protein. (105 aa)    
Predicted Functional Partners:
Cla_0408
Conserved hypothetical protein.
     
 0.826
fldA
Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
       0.825
thiL
Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.641
truD
tRNA pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
       0.641
Cla_0401
Conserved hypothetical protein, putative methylase; Pfam match to PF03602.6 Cons_hypoth95.
       0.521
Cla_0402
Conserved hypothetical protein.
       0.521
Cla_0336
Conserved hypothetical protein, predicted ATP/GTP-binding protein; Pfam match to PF00350.14 Dynamin_N.
  
     0.504
cmeD
Outer membrane component of efflux system; Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP.
  
     0.485
Cla_1496
Conserved hypothetical protein.
  
     0.480
Cla_1174
Conserved hypothetical integral membrane protein.
  
     0.479
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.