STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0408Conserved hypothetical protein. (230 aa)    
Predicted Functional Partners:
Cla_0407
Conserved hypothetical protein.
  
    0.824
fldA
Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
       0.804
Cla_1526
ABC transporter, periplasmic binding protein; Pfam match to PF01547.16 SBP_bac_1.
   
    0.578
Cla_0339
Conserved hypothetical protein, pyridoxamine 5'-phosphate oxidase family; Pfam match to PF01243.11 Pyridox_oxidase.
   
    0.573
thiL
Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.567
truD
tRNA pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
       0.567
p19
19 kDa periplasmic protein.
   
    0.551
Cla_0454
Conserved hypothetical protein.
   
    0.550
Cla_1170
Iron permease, FTR1 family; Pfam match to PF03239.5 FTR1.
   
    0.543
Cla_0401
Conserved hypothetical protein, putative methylase; Pfam match to PF03602.6 Cons_hypoth95.
       0.414
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.