STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ciaIConserved hypothetical protein, probable ATP/GTP-binding protein. (181 aa)    
Predicted Functional Partners:
ciaC
Conserved hypothetical protein.
   
  
 0.854
dut
Deoxyuridine triphosphatase domain protein; Pfam match to PF08761.2 dUTPase_2.
  
  
 0.818
Cla_0410
Conserved hypothetical protein.
       0.804
Cla_0411
Conserved hypothetical integral membrane protein (DUF540 domain protein).
       0.804
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
       0.522
pgk
Phosphoglycerate kinase; Pfam match to PF00162.10 PGK; Belongs to the phosphoglycerate kinase family.
       0.522
gapA
Glyceraldehyde-3-phosphate dehydrogenase; Pfam matches to PF00044.15 Gp_dh_N, and to PF02800.11 Gp_dh_C; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.522
hydA
Quinone-reactive Ni/Fe-hydrogenase, small subunit; Pfam matches to PF08425.1 NiFe_dehyd_N, and to PF01058.13 Oxidored_q6.
       0.518
ciaB
Invasion antigen B.
      
 0.490
htrA
Periplasmic serine protease DO; Pfam match to PF00089.17 Trypsin; Belongs to the peptidase S1C family.
      
 0.487
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.