Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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Cla_0458Saccharopine dehydrogenase; Pfam match to PF03435.9 Saccharop_dh. (401 aa)    
Predicted Functional Partners:
nspC
Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
 
 
 0.985
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
    
 0.918
Cla_0875
Conserved hypothetical protein, putative peptidyl-arginine deiminase; Pfam match to PF04371.6 PAD_porph; Belongs to the agmatine deiminase family.
    
  0.905
aguA
Peptidyl-arginine deiminase family protein; Pfam match to PF04371.6 PAD_porph; Belongs to the agmatine deiminase family.
    
  0.905
modB
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
       0.720
Cla_0456
Transmembrane transport protein, SbmA/BacA family; Pfam match to PF05992.3 SbmA_BacA.
       0.636
Cla_0457
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.551
Cla_0455
Conserved hypothetical protein, putative efflux protein (DUF21 domain protein); Pfam matches to PF01595.11 DUF21, and to PF00571.19 CBS.
       0.500
folE
Pfam match to PF01227.13 GTP_cyclohydroI.
   
   0.473
putA
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
  
 0.463
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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