STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tonB2TonB domain protein; Pfam match to PF03544.5 TonB. (217 aa)    
Predicted Functional Partners:
exbD2
TonB system transport protein ExbD; Pfam match to PF02472.7 ExbD.
 
 
 0.993
exbB2
TonB system transport protein ExbB; Pfam match to PF01618.7 MotA_ExbB.
 
 
 0.990
cfrA
Iron-regulated outer membrane virulence protein, TonB receptor CfrA; Pfam matches to PF07715.6 Plug, and to PF00593.15 TonB_dep_Rec.
 
 
 0.964
exbD1
TonB system transport protein ExbD; Pfam match to PF02472.7 ExbD.
  
 
 0.868
exbB1
TonB system transport protein ExbB; Pfam match to PF01618.7 MotA_ExbB.
 
 
 0.814
dsbI
Disulfide bond formation protein, DsbB family; Pfam match to PF02600.7 DsbB.
  
     0.765
Cla_1243
Glycosyltransferase; Pfam match to PF05704.3 Caps_synth.
  
     0.748
Cla_0114
Conserved hypothetical protein.
  
     0.742
cmeD
Outer membrane component of efflux system; Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP.
  
  
 0.722
Cla_0819
Conserved hypothetical protein.
 
     0.703
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.