STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
exbB2TonB system transport protein ExbB; Pfam match to PF01618.7 MotA_ExbB. (143 aa)    
Predicted Functional Partners:
exbD2
TonB system transport protein ExbD; Pfam match to PF02472.7 ExbD.
 
 
 0.997
tonB2
TonB domain protein; Pfam match to PF03544.5 TonB.
 
 
 0.990
exbD1
TonB system transport protein ExbD; Pfam match to PF02472.7 ExbD.
 
 
 0.956
tonB1
TonB domain protein.
  
 
 0.893
cfrA
Iron-regulated outer membrane virulence protein, TonB receptor CfrA; Pfam matches to PF07715.6 Plug, and to PF00593.15 TonB_dep_Rec.
  
  
 0.795
feoB
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
   
  
 0.779
exbB1
TonB system transport protein ExbB; Pfam match to PF01618.7 MotA_ExbB.
  
   
 0.769
pal
Peptidoglycan-associated lipoprotein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.653
lolC
Conserved hypothetical integral membrane protein, putative permease; Pfam match to PF02687.12 FtsX.
  
     0.557
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. Belongs to the DHBP synthase family.
     
 0.485
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.