STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
gmhBConserved hypothetical protein, putative phosphatase; Possible pseudogene; Pfam match to PF08645.2 PNK3P. (171 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
 0.999
waaE
D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
  
 0.998
waaD
ADP-L-glycero-D-mannoheptose-6-epimerase; Pfam match to PF01370.12 Epimerase.
 
  
 0.955
hisIE
phosphoribosyl-AMP cyclohydrolase/ phosphoribosyl-ATP pyrophosphohydrolase; Pfam matches to PF01502.9 PRA-CH, and to PF01503.8 PRA-PH; In the N-terminal section; belongs to the PRA-CH family.
  
  
 0.928
waaF
Lipopolysaccharide heptosyltransferase II; Pfam match to PF01075.8 Glyco_transf_9.
   
 0.919
ptmE
Flagellin modification protein PtmE, putative sugar-phosphate nucleotide transferase; Pfam matches to PF00571.19 CBS, and to PF00483.14 NTP_transferase.
 
 
 0.907
waaC
Lipopolysaccharide heptosyltransferase I; Pfam match to PF01075.8 Glyco_transf_9.
 
   
 0.859
htrB
Putative lipid A biosynthesis lauroyl acyltransferase; Pfam match to PF03279.4 Lip_A_acyltrans.
  
  
 0.816
waaV
Lipooligosaccharide biosynthesis glycosyltransferase; Pfam match to PF00535.17 Glycos_transf_2.
    
 
 0.667
cccA
Cytochrome c family protein; Pfam match to PF00034.12 Cytochrom_C.
       0.641
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.