STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
waaED,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family. (457 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
 0.999
gmhB
Conserved hypothetical protein, putative phosphatase; Possible pseudogene; Pfam match to PF08645.2 PNK3P.
  
 0.998
waaD
ADP-L-glycero-D-mannoheptose-6-epimerase; Pfam match to PF01370.12 Epimerase.
 
 
 0.997
waaC
Lipopolysaccharide heptosyltransferase I; Pfam match to PF01075.8 Glyco_transf_9.
 
  
 0.969
waaF
Lipopolysaccharide heptosyltransferase II; Pfam match to PF01075.8 Glyco_transf_9.
 
  
 0.924
waaV
Lipooligosaccharide biosynthesis glycosyltransferase; Pfam match to PF00535.17 Glycos_transf_2.
      
 0.804
kdtA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
   
 0.706
cccA
Cytochrome c family protein; Pfam match to PF00034.12 Cytochrom_C.
       0.608
metK
S-adenosylmethionine synthetase; Pfam matches to PF00438.11 S-AdoMet_synt_N, and to PF02772.7 S-AdoMet_synt_M; Belongs to the AdoMet synthase family.
      
 0.507
kpsF
Arabinose-5-phosphate isomerase; Pfam matches to PF01380.13 SIS, and to PF00571.19 CBS; Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.457
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.