STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0558Type II restriction-modification enzyme. (1186 aa)    
Predicted Functional Partners:
Cla_0556
Conserved hypothetical protein.
  
  
 0.905
Cla_1538
NFACT-R_1 domain-containing protein; Pfam match to PF05670.4 DUF814.
  
  
 0.898
Cla_0557
4-hydroxybenzoyl-CoA thioesterase family protein; Pfam match to PF03061.13 4HBT.
       0.610
dsbA
Thiol:disulfide interchange protein, DsbA family.
       0.538
hsdS
Type I restriction-modification system, S subunit; Pfam matches to PF01420.10 Methylase_S, and to PF01420.10 Methylase_S.
   
    0.476
astA
Arylsulfate sulfotransferase; Pfam match to PF05935.2 Arylsulfotrans.
       0.448
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.