STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsbAThiol:disulfide interchange protein, DsbA family. (216 aa)    
Predicted Functional Partners:
dsbD
Thiol:disulfide interchange protein DsbD; Pfam match to PF02683.6 DsbD.
  
   
 0.874
Cla_0989
Conserved hypothetical protein, ArsC family; Pfam match to PF03960.6 ArsC; Belongs to the ArsC family.
   
 
 0.867
astA
Arylsulfate sulfotransferase; Pfam match to PF05935.2 Arylsulfotrans.
 
   
 0.797
sdaC
L-serine transporter.
  
     0.716
dsbI
Disulfide bond formation protein, DsbB family; Pfam match to PF02600.7 DsbB.
 
  
 0.643
Cla_0278
Anaerobic C4-dicarboxylate transporter, putative; Pfam match to PF03606.6 DcuC.
  
     0.631
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
      
 0.616
Cla_0051
Putative C4-dicarboxylate transporter; Pfam match to PF03606.6 DcuC.
  
     0.600
mnmC
Conserved hypothetical protein (DUF752 domain protein); Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
  
    0.568
Cla_1384
Conserved hypothetical protein, putative metal-dependent membrane protease; Pfam match to PF02517.7 Abi.
  
     0.540
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.