STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0565Conserved hypothetical protein. (187 aa)    
Predicted Functional Partners:
cmoB
Methyltransferase, putative; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
       0.804
pflB
Conserved hypothetical integral membrane protein (TPR domain protein); Pfam matches to PF00515.19 TPR_1, and to PF00515.19 TPR_1.
  
 
   0.740
Cla_0370
Conserved hypothetical protein.
  
     0.737
Cla_0632
Conserved hypothetical protein.
  
     0.720
flgP
Conserved hypothetical lipoprotein (DUF400 domain protein); Pfam match to PF04164.4 DUF400.
  
    0.717
flaC
Flagellin; Pfam match to PF00669.11 Flagellin_N.
  
   0.711
plsX
Fatty acidphospholipid synthesis protein; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
  
  
 0.702
Cla_0371
Conserved hypothetical protein (DUF507 domain protein); Pfam match to PF04368.4 DUF507.
  
     0.633
Cla_0568
Probable integral membrane protein.
       0.629
ybgF
Conserved hypothetical protein.
  
     0.619
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.