Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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Score
cmoBMethyltransferase, putative; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. (291 aa)    
Predicted Functional Partners:
cmoA
Conserved hypothetical protein, possible methylase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).
 
 0.920
Cla_0565
Conserved hypothetical protein.
       0.825
flaC
Flagellin; Pfam match to PF00669.11 Flagellin_N.
   
   0.744
Cla_0568
Probable integral membrane protein.
       0.691
hemK
Modification methylase, HemK family; Pfam match to PF05175.5 MTS.
     
 0.627
Cla_0570
Peptidase, M48 family; Pfam match to PF01435.9 Peptidase_M48.
       0.624
trpS
tryptophanyl-tRNA synthetase; Pfam match to PF00579.16 tRNA-synt_1b; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.529
flgG2
Flagellar distal rod protein FlgG; Pfam match to PF00460.11 Flg_bb_rod.
    
   0.512
Cla_0571
ABC transporter, ATP-binding protein; Pfam matches to PF00005.18 ABC_tran, and to PF00005.18 ABC_tran.
  
   0.504
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
 
     0.406
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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