STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0576Major facilitator superfamily transporter; Pfam match to PF07690.7 MFS_1. (398 aa)    
Predicted Functional Partners:
hemL
Glutamate-1-semialdehyde-2,1-aminomutase; Pfam match to PF00202.12 Aminotran_3.
  
    0.806
flhB2
Conserved hypothetical protein, possible flagellar biosynthesis protein.
       0.804
Cla_0575
Conserved hypothetical protein.
       0.804
Cla_0577
Conserved hypothetical integral membrane protein.
       0.804
Cla_0578
Conserved hypothetical integral membrane protein.
       0.804
Cla_0580
Conserved hypothetical protein.
       0.804
folD
5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.607
lepP
Pfam match to PF00717.14 Peptidase_S24; Belongs to the peptidase S26 family.
  
    0.593
Cla_1451
BCCT (betaine/carnitine/choline) family transporter; Pfam match to PF02028.8 BCCT; Belongs to the BCCT transporter (TC 2.A.15) family.
 
   
 0.414
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.