STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0580Conserved hypothetical protein. (114 aa)    
Predicted Functional Partners:
petA
Ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit; Pfam match to PF00355.17 Rieske.
  
 
 0.962
petB
Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.951
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; Pfam match to PF02433.6 FixO.
  
 
 0.931
ccoN
Cytochrome c oxidase, cbb3-type, subunit I; Pfam match to PF00115.11 COX1; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.916
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.855
Cla_1136
Conserved hypothetical protein (DUF461 domain protein); Pfam match to PF04314.4 DUF461.
   
 
 0.834
hemL
Glutamate-1-semialdehyde-2,1-aminomutase; Pfam match to PF00202.12 Aminotran_3.
  
    0.815
flhB2
Conserved hypothetical protein, possible flagellar biosynthesis protein.
       0.804
Cla_0575
Conserved hypothetical protein.
       0.804
Cla_0576
Major facilitator superfamily transporter; Pfam match to PF07690.7 MFS_1.
       0.804
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.