STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cjaCAmino acid ABC transporter, permease/substrate-binding lipoprotein; Pfam match to PF00497.11 SBP_bac_3. (252 aa)    
Predicted Functional Partners:
Cla_0599
Amino acid ABC transporter, permease protein; Pfam match to PF00528.13 BPD_transp_1.
 0.996
glnP
Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Pfam match to PF00528.13 BPD_transp_1.
 
 0.982
papP
Conserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (permease protein); Pfam match to PF00528.13 BPD_transp_1.
 
 
 0.980
Cla_0598
Amino acid ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
 0.962
Cla_0691
Conserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (permease protein); Pfam match to PF00528.13 BPD_transp_1.
 
 0.884
papQ
Conserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (ATP-binding protein); Pfam match to PF00005.18 ABC_tran.
 
 
 0.807
cmeC
RND efflux system, outer membrane lipoprotein CmeC; Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP.
      
 0.692
mapA
Outer membrane liproprotein MapA.
      
 0.654
peb4
Major antigenic peptide PEB-cell binding factor; Pfam match to PF00639.12 Rotamase.
      
 0.597
bamA
Conserved hypothetical protein, putative outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
      
 0.590
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.