STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0600Sodium:alanine symporter family protein; Pfam match to PF01235.8 Na_Ala_symp. (480 aa)    
Predicted Functional Partners:
Cla_0598
Amino acid ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
  
  
 0.567
putA
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
    0.545
Cla_0599
Amino acid ABC transporter, permease protein; Pfam match to PF00528.13 BPD_transp_1.
  
    0.509
glyS
glycyl-tRNA synthetase, beta subunit; Pfam match to PF02092.8 tRNA_synt_2f.
       0.485
Cla_0602
Peptidase, M23/M37 family; Pfam match to PF01551.13 Peptidase_M23.
       0.484
Cla_0603
Conserved hypothetical protein; Pfam match to PF02636.8 DUF185.
       0.484
flgG2
Flagellar distal rod protein FlgG; Pfam match to PF00460.11 Flg_bb_rod.
    
   0.406
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.