STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0602Peptidase, M23/M37 family; Pfam match to PF01551.13 Peptidase_M23. (268 aa)    
Predicted Functional Partners:
glyS
glycyl-tRNA synthetase, beta subunit; Pfam match to PF02092.8 tRNA_synt_2f.
       0.804
Cla_0603
Conserved hypothetical protein; Pfam match to PF02636.8 DUF185.
       0.804
pbpA
Penicillin-binding protein 1A; Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase.
  
     0.687
fliY
Flagellar motor switch protein FliY; Pfam match to PF01052.11 SpoA.
   
   0.608
pbpC2
Penicillin-binding protein 1C; Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase.
  
     0.592
mltD
Peptidoglycan-binding LysM:Lytic transglycosylase, catalytic (SLT family); Pfam matches to PF01464.11 SLT, and to PF01476.11 LysM.
 
  
 0.487
Cla_0600
Sodium:alanine symporter family protein; Pfam match to PF01235.8 Na_Ala_symp.
       0.484
lepP
Pfam match to PF00717.14 Peptidase_S24; Belongs to the peptidase S26 family.
  
  
 0.456
pabC
4-amino-4-deoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
   
 0.425
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.