STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recNDNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (504 aa)    
Predicted Functional Partners:
nadK
Conserved hypothetical protein, putative inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
  
 0.837
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.779
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
   
 0.698
pbpC
Penicillin-binding protein 2; Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase.
  
  
 0.681
mltD
Peptidoglycan-binding LysM:Lytic transglycosylase, catalytic (SLT family); Pfam matches to PF01464.11 SLT, and to PF01476.11 LysM.
       0.662
cbrR
Two component response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00990.12 GGDEF.
       0.654
tatD
TatD-related deoxyribonuclease; Pfam match to PF01026.12 TatD_DNase.
       0.654
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
       0.654
kdsC
Conserved hypothetical protein, putative YrbI family phosphatase.
       0.654
Cla_0657
Conserved hypothetical protein.
       0.654
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.