STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpCPenicillin-binding protein 2; Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase. (608 aa)    
Predicted Functional Partners:
rodA
Rod shape-determining protein; Pfam match to PF01098.10 FTSW_RODA_SPOVE; Belongs to the SEDS family.
 
 0.987
pbpB
Penicillin-binding protein; Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase.
  
  
0.933
mltD
Peptidoglycan-binding LysM:Lytic transglycosylase, catalytic (SLT family); Pfam matches to PF01464.11 SLT, and to PF01476.11 LysM.
  
 
 0.891
ftsW
Cell division protein, FtsW/RodA/SpoVE family; Pfam match to PF01098.10 FTSW_RODA_SPOVE; Belongs to the SEDS family.
 
 
 0.883
mreB
Rod shape-determining protein MreB; Pfam match to PF06723.4 MreB_Mbl.
 
 
 
 0.867
mreC
Rod shape-determining protein MreC.
 
 
 0.863
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
 0.842
engB
Conserved hypothetical protein, predicted ATP/GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
  
    0.807
cbrR
Two component response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00990.12 GGDEF.
       0.804
tatD
TatD-related deoxyribonuclease; Pfam match to PF01026.12 TatD_DNase.
       0.804
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.