STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arsRTranscriptional regulator, ArsR family; Pfam match to PF01022.11 HTH_5. (105 aa)    
Predicted Functional Partners:
arsP
Conserved hypothetical integral membrane protein (DUF318 domain protein); Pfam match to PF03773.4 DUF318.
 
  
 0.957
tatC
Sec-independent protein secretion pathway component TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
     
 0.554
Cla_0664
Sec-independent protein secretion pathway component TatB, putative; Pfam match to PF02416.7 MttA_Hcf106.
       0.549
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.546
por
Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam matches to PF01855.10 POR_N, and to PF01558.9 POR.
     
 0.502
nhaD
Na+/H+ antiporter; Pfam match to PF03600.7 CitMHS.
  
  
 0.476
cmeR
Transcriptional regulator, TetR family; Pfam match to PF00440.14 TetR_N.
   
  
 0.470
flgR
Sigma-54 dependent DNA-binding response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00158.17 Sigma54_activat.
      
 0.460
aas
Pfam matches to PF07690.7 MFS_1, and to PF01553.12 Acyltransferase.
     
 0.413
cheV
Chemotaxis protein CheV; Pfam matches to PF01584.10 CheW, and to PF00072.15 Response_reg.
      
 0.406
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.