STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0685Conserved hypothetical integral membrane protein, putative transporter (DUF475 domain protein); Pfam match to PF07690.7 MFS_1. (397 aa)    
Predicted Functional Partners:
mqnC
Radical SAM domain protein; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2).
       0.616
Cla_0687
Peptidase, M16 family; Pfam match to PF05193.12 Peptidase_M16_C.
       0.616
recG
ATP-dependent DNA helicase; Pfam matches to PF00270.20 DEAD, and to PF00271.22 Helicase_C.
       0.616
Cla_1496
Conserved hypothetical protein.
  
     0.602
trxC
Possible periplasmic thioredoxin; Pfam match to PF00085.11 Thioredoxin.
  
     0.573
Cla_1174
Conserved hypothetical integral membrane protein.
  
     0.572
nssR
Conserved hypothetical protein, putative transcriptional regulator; Pfam match to PF00027.20 cNMP_binding.
     
 0.571
cmeD
Outer membrane component of efflux system; Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP.
  
  
 0.522
Cla_0695
TrkA domain protein; Pfam match to PF02080.12 TrkA_C.
 
     0.518
mreC
Rod shape-determining protein MreC.
  
     0.499
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.