STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recGATP-dependent DNA helicase; Pfam matches to PF00270.20 DEAD, and to PF00271.22 Helicase_C. (607 aa)    
Predicted Functional Partners:
mqnC
Radical SAM domain protein; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2).
       0.804
Cla_0687
Peptidase, M16 family; Pfam match to PF05193.12 Peptidase_M16_C.
       0.804
nssR
Conserved hypothetical protein, putative transcriptional regulator; Pfam match to PF00027.20 cNMP_binding.
       0.804
papP
Conserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (permease protein); Pfam match to PF00528.13 BPD_transp_1.
       0.658
Cla_0691
Conserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (permease protein); Pfam match to PF00528.13 BPD_transp_1.
       0.658
papQ
Conserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (ATP-binding protein); Pfam match to PF00005.18 ABC_tran.
       0.658
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.627
Cla_0685
Conserved hypothetical integral membrane protein, putative transporter (DUF475 domain protein); Pfam match to PF07690.7 MFS_1.
       0.616
murD
Pfam match to PF08245.3 Mur_ligase_M; Belongs to the MurCDEF family.
  
     0.586
pbpB
Penicillin-binding protein; Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase.
  
    0.584
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.