STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
papPConserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (permease protein); Pfam match to PF00528.13 BPD_transp_1. (215 aa)    
Predicted Functional Partners:
papQ
Conserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (ATP-binding protein); Pfam match to PF00005.18 ABC_tran.
 
 0.987
cjaC
Amino acid ABC transporter, permease/substrate-binding lipoprotein; Pfam match to PF00497.11 SBP_bac_3.
 
 
 0.980
glnH
Glutamine-binding periplasmic protein; Pfam match to PF00497.11 SBP_bac_3.
 
 
 0.953
cjaA
Amino acid ABC transporter, periplasmic solute-binding lipoprotein; Pfam match to PF00497.11 SBP_bac_3.
 
 
 0.934
Cla_0598
Amino acid ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
 0.931
Cla_0691
Conserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (permease protein); Pfam match to PF00528.13 BPD_transp_1.
 
 
 
0.926
mqnC
Radical SAM domain protein; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2).
       0.714
Cla_0687
Peptidase, M16 family; Pfam match to PF05193.12 Peptidase_M16_C.
       0.714
recG
ATP-dependent DNA helicase; Pfam matches to PF00270.20 DEAD, and to PF00271.22 Helicase_C.
       0.714
cjaB
Major facilitator family transporter CjaB; Pfam match to PF07690.7 MFS_1.
  
    0.646
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.