Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cla_0695TrkA domain protein; Pfam match to PF02080.12 TrkA_C. (468 aa)    
Predicted Functional Partners:
Cla_0697
Mechanosensitive ion channel family protein; Pfam match to PF00924.9 MS_channel.
 
     0.927
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
       0.825
Cla_0698
MiaB-like tRNA modifying enzyme; Pfam matches to PF00919.11 UPF0004, and to PF04055.12 Radical_SAM.
       0.825
ftsH1
Cell division protein FtsH; Pfam match to PF00004.20 AAA; Belongs to the AAA ATPase family.
       0.825
mog
Molybdenum cofactor biosynthesis protein; Pfam match to PF00994.15 MoCF_biosynth.
       0.825
mreC
Rod shape-determining protein MreC.
  
     0.770
Cla_0960
Conserved hypothetical lipoprotein.
  
     0.767
ctsW
Conserved hypothetical protein, possible purine/pyrimidine phosphoribosyltransferase.
  
     0.766
Cla_1496
Conserved hypothetical protein.
  
     0.766
Cla_0371
Conserved hypothetical protein (DUF507 domain protein); Pfam match to PF04368.4 DUF507.
  
     0.765
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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