STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0698MiaB-like tRNA modifying enzyme; Pfam matches to PF00919.11 UPF0004, and to PF04055.12 Radical_SAM. (418 aa)    
Predicted Functional Partners:
ftsH1
Cell division protein FtsH; Pfam match to PF00004.20 AAA; Belongs to the AAA ATPase family.
     
 0.808
Cla_0695
TrkA domain protein; Pfam match to PF02080.12 TrkA_C.
       0.804
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
       0.804
Cla_0697
Mechanosensitive ion channel family protein; Pfam match to PF00924.9 MS_channel.
       0.804
mog
Molybdenum cofactor biosynthesis protein; Pfam match to PF00994.15 MoCF_biosynth.
       0.804
mrp
ATP/GTP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
   
 0.620
cjaB
Major facilitator family transporter CjaB; Pfam match to PF07690.7 MFS_1.
  
    0.581
cjaA
Amino acid ABC transporter, periplasmic solute-binding lipoprotein; Pfam match to PF00497.11 SBP_bac_3.
       0.577
rlmN
Conserved hypothetical protein, radical SAM enzyme (Cfr family); Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
  
  
 0.479
papQ
Conserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (ATP-binding protein); Pfam match to PF00005.18 ABC_tran.
   
   0.464
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.