STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ftsH1Cell division protein FtsH; Pfam match to PF00004.20 AAA; Belongs to the AAA ATPase family. (532 aa)    
Predicted Functional Partners:
mog
Molybdenum cofactor biosynthesis protein; Pfam match to PF00994.15 MoCF_biosynth.
  
    0.827
Cla_0698
MiaB-like tRNA modifying enzyme; Pfam matches to PF00919.11 UPF0004, and to PF04055.12 Radical_SAM.
     
 0.826
Cla_0695
TrkA domain protein; Pfam match to PF02080.12 TrkA_C.
       0.825
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
       0.825
Cla_0697
Mechanosensitive ion channel family protein; Pfam match to PF00924.9 MS_channel.
       0.825
Cla_1405
Conserved hypothetical transmembrane protein (SPFH domain / Band 7 family); Pfam match to PF01145.16 Band_7.
   
 0.759
atpA
ATP synthase F1 sector, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
 0.702
rpsA
30S ribosomal protein S1; Pfam matches to PF00575.14 S1, and to PF00575.14 S1.
  
   0.694
clpX
ATP-dependent ClpXP protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
  
 0.679
Cla_0570
Peptidase, M48 family; Pfam match to PF01435.9 Peptidase_M48.
   
 0.659
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.