Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hyaDNi/Fe hydrogenase, expression/formation protein; Pfam match to PF01750.9 HycI. (177 aa)    
Predicted Functional Partners:
hyaC
Ni/Fe hydrogenase, cytochrome b subunit; Pfam match to PF01292.11 Ni_hydr_CYTB.
 
  
 0.980
hyaB
Ni/Fe-hydrogenase, large subunit; Pfam match to PF00374.10 NiFeSe_Hases; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.975
hyaA
Ni/Fe-hydrogenase, small subunit; Pfam matches to PF08425.1 NiFe_dehyd_N, and to PF01058.13 Oxidored_q6.
 
  
 0.965
hydA
Quinone-reactive Ni/Fe-hydrogenase, small subunit; Pfam matches to PF08425.1 NiFe_dehyd_N, and to PF01058.13 Oxidored_q6.
 
  
 0.846
ndh
NADH dehydrogenase; Pfam match to PF00070.18 Pyr_redox.
    
   0.795
por
Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam matches to PF01855.10 POR_N, and to PF01558.9 POR.
  
  
 0.595
clpB
Protein disaggregating chaperone ClpB; Pfam matches to PF02861.11 Clp_N, and to PF00004.20 AAA; Belongs to the ClpA/ClpB family.
  
    0.556
hypC
Hydrogenase assembly chaperone HypC; Pfam match to PF01455.9 HupF_HypC.
 
  
 0.502
hypF
Transcriptional regulatory protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.
     
 0.496
napH
Methylamine utilization ferredoxin-type protein; Pfam match to PF00037.18 Fer4.
  
   
 0.428
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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