STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0731Conserved hypothetical protein, putative periplasmic protein. (136 aa)    
Predicted Functional Partners:
Cla_0732
Conserved hypothetical integral membrane protein, Rhomboid family; Pfam match to PF01694.13 Rhomboid.
       0.539
sixA
Phosphohistidine phosphatase SixA, putative; Pfam match to PF00300.13 PGAM.
       0.539
Cla_1085
Conserved hypothetical integral membrane protein (DUF1212 domain protein); Pfam match to PF06738.3 DUF1212.
  
     0.521
Cla_1386
Conserved hypothetical protein (DUF452 domain protein); Pfam match to PF04301.4 DUF452.
  
     0.515
Cla_1086
Conserved hypothetical integral membrane protein.
  
     0.506
Cla_0114
Conserved hypothetical protein.
  
     0.449
Cla_1243
Glycosyltransferase; Pfam match to PF05704.3 Caps_synth.
  
     0.432
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.